The Inter-European Union Reference Laboratories (EURLs) Working Group (WG) has been established by the European Commission with the aim to promote the use of Next Generation Sequencing (NGS) across the EURLs' networks, build NGS capacity within the EU and ensure liaison with the work of the EURLs and the work of EFSA and ECDC European Centre for Disease Prevention and Control on the NGS mandate sent by the Commission. The WG includes all the EURLs operating in the field of the microbiological contamination of food and feed and is coordinated by the EURL European Union Reference Laboratory for E. coli.
The documents are meant to provide guidance to the laboratories in the area of application of NGS and have been produced by the working group with the aim of being diffused to all the networks of NRLs National Reference Laboratories .
Links to these documents at the respective curators' websites can be found below.
- Overview of conducted and planned PTs – curated by EURL-Antimicrobial Resistance
- Reference Whole Genome Sequencing collection – curated by EURL-Salmonella
- NGS laboratory procedures – curated by EURL-Parasites
- Bioinformatics tools for basic analysis of Next Generation Sequencing data – curated by EURL-E. coli
- Guidance document for cluster analysis of whole genome sequence data – curated by EURL-Campylobacter
- Guidance document for NGS-Benchmarking – curated by EURL-Listeria monocytogenes
- Inventory of training supports – curated by EURL-Coagulase-Positive Staphylococci (pdf)
- Survey on the use of NGS across the NRLs networks – curated by EURL-E. coli
Supporting document for preparing high quality DNA for Whole Genome Sequencing – curated by EURL-E. coli
The inter-EURLs WG on NGS organised a Science meets Policy conference entitled Modern technologies to enable response to crises. Next Generation Sequencing to tackle food-borne diseases, held at September 25, 2020.
The presentations given at this conference can be found at the website of the EURL-E. coli.